Links to Tools & Resources


Parasite genome/EST databases                                

ToxoDB

    GT-1 BLAST

    TgSAGEDB

    Full-length EST project

PlasmoDB

CryptoDB

Eimeria

Theileria
EuPathDB (ApiDB) GeneDB ProtozoaDB  

 

Other genomes...

Saccharomyces Dictyostelium

Ensembl

WormBase FlyBase  
Arabidopsis Mouse  

 

Bioinformatics tools

    Sequence analysis                Motif searches            BLASTs and lit searches            

Reverse complement  iPSORT - predict localization NCBI
Tutorial - alignments and trees InterProScan ExPASy BLAST
ClustalW LOCtree - predict localization  
Phylodendron - Tree printer MitoProt  
TREE PUZZLE NLSdb  
T-COFFEE Pfam  
GENSCAN PHYRE  
DNA Translator SignalP  
NEB cutter SMART PubCrawler
RE mapper 1; RE mapper 2 TargetP - predict localization PubMed Central
TACG RE mapping TMHMM  
     
  MEME/MAST Faculty of 1000
  PromoterDB  
BioTools @ UMass STAMP - DNA motif search  

 Proteomics: 

     Protein Prospector (MS-FIT)   

     ProFound   

     Mascot

 Tools for Structural Biology: The Molecular Level

 Protocols: iPROTOCOL

 Others:

  CellCircuits (protein interaction networks)

  Bioinformatics tutorials (2can site)

  iHOP (Information Hyperlinked Over Proteins)

  KEGG - Kyoto Encyclopedia of Genes and Genomes

 The World Famous PCR Jump Station 

 

Chromatin resources & more

Chromatin Structure & Function Antibodies

Protocols on-line

ChIPs Tips

 

IUSM facilities and services

Campus Map Imaging Center Radiation Safety
DNA Sequencing (BBF)  Microarrays (CMG)  Research Compliance
Electron Microscopy MSDS  Research at IU home
Human Resources Parking Ruth Lilly Biomed Library
IACUC    

 

Supplies

BIOCOMPARE:  http://www.biocompare.com/

Reagents database:  http://www.exactantigen.com/welcome.html

Biotech Industry Supplier Registry:  http://www.biosciregister.com/

AIDS reagents DOT Scientific   Pierce
Ambion  Fisher  Promega
Amersham Invitrogen Qiagen
ATCC  Invivogen Santa Cruz
Bio-Rad  NEB Sigma
Chemicon Novagen/Calbiochem/EMD Stratagene
Clontech Office Depot Upstate
CLP Perkin Elmer  VWR

 

News, Funding, Meetings & Organizations

The Anti-Toxo News Blog

ASM; 109th General Meeting; Student Fellowships; MicrobeWorld

CAMP

Cold Spring Harbor Meetings

Gordon Conferences

     2006, 2008

Indiana CTSI - Clinical & Translational Sciences Institute

International Toxoplasma Congress - 2007

Keystone Symposia

MPM (Woods Hole, MA) 2007, 2008

Scientists Without Borders

Student Research Opportunities & Fellowships

Toxoplasma Centennial Congress

Universities Allied for Essential Medicines (IU chapter); UAEM

 

Training & Safety

EHS homepage

Formaldehyde Training

Radiation Safety

Bloodborne Pathogens Training

   Annual refresher (on-line)

IACUC

LARC

MSDS database

 

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