Links and Resources

Links to Tools & Resources

Parasite genome/EST databases

PlasmoDB	CryptoDB	Eimeria	Theileria
EuPathDB (ApiDB)	GeneDB	ProtozoaDB

Other genomes...

Bioinformatics tools

Sequence analysis Motif searches BLASTs and lit searches

BioEdit Seq Analysis Tools	iPSORT - predict localization	NCBI
Reverse complement	InterProScan	ExPASy BLAST
Tutorial - alignments and trees	LOCtree - predict localization
ClustalW	MitoProt
Phylodendron - Tree printer	NLSdb; PredictNLS
TREE PUZZLE	Pfam
T-COFFEE	PHYRE
GENSCAN	SignalP
DNA Translator	SMART	PubCrawler
NEB cutter	TargetP - predict localization	PubMed Central
RE mapper 1; RE mapper 2	TMHMM
TACG RE mapping
Venn diagrams - BioVenn	MEME/MAST	Faculty of 1000
	PromoterDB
BioTools @ UMass	STAMP - DNA motif search

Proteomics:

Protein Prospector (MS-FIT)

Tools for Structural Biology: The Molecular Level

Protocols: iPROTOCOL

Others:

CellCircuits (protein interaction networks)

iHOP (Information Hyperlinked Over Proteins)

KEGG - Kyoto Encyclopedia of Genes and Genomes

Molecular Biology Databases

Chromatin resources & more

Chromatin Structure & Function	Antibodies
Epigenie	ChIPs Tips
Protocols on-line

IUSM facilities and services

Campus Map	Imaging Center	Radiation Safety
DNA Sequencing (BBF)	Microarrays (CMG)	Research Compliance
Electron Microscopy	MSDS	Research at IU home
Human Resources	Parking	Ruth Lilly Biomed Library
IACUC		IUPUI Environmental Healthy & Safety

Supplies

BIOCOMPARE: http://www.biocompare.com/

Biotech Industry Supplier Registry: http://www.biosciregister.com/